pegas: Population and Evolutionary Genetics Analysis System

pegas is an R package for the analysis of population genetic data.

pegas requires two other R packages: ape and adegenet.

pegas is distributed on CRAN.

The version on CRAN is 0.9 and it can be downloaded here.

The citation for pegas is:
Paradis E. 2010. pegas: an R package for population genetics with an integrated–modular approach.
Bioinformatics 26: 419–420. doi:10.1093/bioinformatics/btp696.
You can find here: pegas uses data structures from ape to code phylogenies and DNA sequences: details on these structures can be found here.

pegas is also available on GitHub (sometimes with a development version); it can be installed from R with:

library(devtools)
install_github("emmanuelparadis/pegas/pegas")


Updated: June 29, 2016
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